Index

A

ABC (class in nornir_pools.poolbase) abstractmethod() (in module nornir_pools.poolbase) active_tasks (nornir_pools.poolbase.LocalThreadPoolBase property) (nornir_pools.poolbase.PoolBase property) add_done_callback() (nornir_imageregistration.assemble_tiles.Future method) add_process() (nornir_pools.IPool method) (nornir_pools.poolbase.IPool method) add_task() (nornir_pools.IPool method) (nornir_pools.poolbase.IPool method) add_threads_if_needed() (nornir_pools.poolbase.LocalThreadPoolBase method) add_worker_thread() (nornir_pools.poolbase.LocalThreadPoolBase method) AddArguments() (nornir_buildmanager.pipelinemanager.ArgumentSet method) AddAttributes() (nornir_buildmanager.pipelinemanager.ArgumentSet method) AddBlock() (nornir_volumemodel.model.volume.Volume method) (nornir_volumemodel.Volume method) AddChannel() (nornir_volumemodel.model.section.Section method) (nornir_volumemodel.Section method) AddChild() (nornir_buildmanager.pipelinemanager.XElementWrapper method) AddFilter() (nornir_volumemodel.Channel method) (nornir_volumemodel.model.channel.Channel method) AddOnChangeEventListener() (nornir_imageregistration.ITransformChangeEvents method) AddParameters() (nornir_buildmanager.pipelinemanager.ArgumentSet method) AddPipelineNodeVariable() (nornir_buildmanager.pipelinemanager.PipelineManager static method) AddSection() (nornir_volumemodel.Block method) (nornir_volumemodel.model.block.Block method) AddTransform() (nornir_volumemodel.Channel method) (nornir_volumemodel.model.channel.Channel method) AddVariable() (nornir_buildmanager.pipelinemanager.ArgumentSet method) aggregate_profiler_data() (in module nornir_pools)

AlignmentRecord (class in nornir_imageregistration.alignment_record) angle (nornir_imageregistration.alignment_record.AlignmentRecord property) (nornir_imageregistration.assemble.IRigidTransform property) Any (class in nornir_buildmanager.pipelinemanager) (class in nornir_imageregistration.assemble) append() (nornir_buildmanager.pipelinemanager.XElementWrapper method) (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) appendleft() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) ApplyOSThreadLimit() (in module nornir_pools) ApproxEqual() (in module nornir_imageregistration.core) argname (nornir_buildmanager.pipelinemanager.PipelineArgumentNotFound attribute) args (nornir_pools.ParamSpec attribute) (nornir_pools.Task attribute) (nornir_pools.task.Task attribute) Arguments (nornir_buildmanager.pipelinemanager.ArgumentSet property) ArgumentSet (class in nornir_buildmanager.pipelinemanager) array_distance() (in module nornir_imageregistration.core) as_completed() (in module nornir_imageregistration.assemble_tiles) assembly_source_sample_mask() (in module nornir_imageregistration.assemble) astimezone() (nornir_buildmanager.pipelinemanager.datetime method) AtExitLock (nornir_pools.poolbase.LocalThreadPoolBase attribute) AtExitRegisteredWaitTime (nornir_pools.poolbase.LocalThreadPoolBase attribute) Attribs (nornir_buildmanager.pipelinemanager.ArgumentSet property) AttributesChanged (nornir_buildmanager.pipelinemanager.XElementWrapper property) attribValue (nornir_buildmanager.pipelinemanager.PipelineRegExSearchFailed attribute) AxisNames (nornir_volumemodel.model.scale.Scale property) (nornir_volumemodel.Scale property) AxisScale (class in nornir_volumemodel.model.scale)

B

Block (class in nornir_volumemodel) (class in nornir_volumemodel.model.block) Blocks (nornir_volumemodel.model.volume.Volume property) (nornir_volumemodel.Volume property) Bounds (nornir_volumecontroller.base_objects.Volume property) (nornir_volumecontroller.base_objects.VolumeInterface property) (nornir_volumecontroller.Volume property)

buf (nornir_imageregistration.core.SharedMemory property) BuildParserRoot() (in module nornir_buildmanager.build), [1] BuildSectionChannelMap() (in module nornir_volumecontroller.spatial) BuildTilePyramidsMemoryCpu() (in module nornir_imageregistration.core) BuildTilePyramidsMemoryGpu() (in module nornir_imageregistration.core) BuildVolumeTransformMap() (in module nornir_volumecontroller.spatial)

C

cache_dir (nornir_imageregistration.assemble_tiles.WindowFilterCache attribute) Calculate2DBoundingBox() (nornir_volumecontroller.base_objects.Volume method) (nornir_volumecontroller.Volume method) CalcVolumeChecksum() (nornir_buildmanager.pipelinemanager.VolumeManager class method) call_pipeline() (in module nornir_buildmanager.build), [1] call_recover_import_meta_data() (in module nornir_buildmanager.build), [1] call_recover_links() (in module nornir_buildmanager.build), [1] call_repair_xml() (in module nornir_buildmanager.build), [1] called_from_pool_worker() (nornir_pools.poolbase.LocalThreadPoolBase method) cancel() (nornir_imageregistration.assemble_tiles.Future method) cancelled() (nornir_imageregistration.assemble_tiles.Future method) cast() (in module nornir_imageregistration.core) ccAddresses (nornir_shared.emaillib.EmailArgs attribute) ChangesSinceLastValidation (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) Channel (class in nornir_volumemodel) (class in nornir_volumemodel.model.channel) Channels (nornir_volumecontroller.base_objects.Volume property) (nornir_volumecontroller.base_objects.VolumeInterface property) (nornir_volumecontroller.Volume property) (nornir_volumemodel.model.section.Section property) (nornir_volumemodel.Section property) Checksum (nornir_buildmanager.pipelinemanager.XElementWrapper property) (nornir_volumemodel.FileResource property) (nornir_volumemodel.model.base_classes.FileResource property) (nornir_volumemodel.model.transform.FileResource property) ChildElementObjects() (in module nornir_volumemodel.persistance.nornir_xml.main) ChildrenChanged (nornir_buildmanager.pipelinemanager.XElementWrapper property) Clean() (nornir_buildmanager.pipelinemanager.XElementWrapper method) (nornir_buildmanager.pipelinemanager.XResourceElementWrapper method) CleanIfInvalid() (nornir_buildmanager.pipelinemanager.XElementWrapper method) clear() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) ClearAttributes() (nornir_buildmanager.pipelinemanager.ArgumentSet method)

ClearParameters() (nornir_buildmanager.pipelinemanager.ArgumentSet method) close() (nornir_imageregistration.core.SharedMemory method) close_shared_memory() (in module nornir_imageregistration.core) ClosePools() (in module nornir_pools) CloseProcessPools() (in module nornir_pools) CloseThreadPools() (in module nornir_pools) combine() (nornir_buildmanager.pipelinemanager.datetime class method) CompareAttributes() (nornir_buildmanager.pipelinemanager.XElementWrapper method) CompositeImage() (in module nornir_imageregistration.assemble_tiles) CompositeImageWithZBuffer() (in module nornir_imageregistration.assemble_tiles) ConstrainedRange() (in module nornir_imageregistration.core) Contains() (nornir_buildmanager.pipelinemanager.XElementWrapper method) ConvertImagesInDict() (in module nornir_imageregistration.core) ConvertImagesInDictGpu() (in module nornir_imageregistration.core) ConvertImagesInDictGpuPyramid() (in module nornir_imageregistration.core) ConvertImagesInDictPyramid() (in module nornir_imageregistration.core) Copy() (nornir_buildmanager.pipelinemanager.XElementWrapper method) copy() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) CorrectPeakForOriginalImageSize() (nornir_imageregistration.alignment_record.AlignmentRecord method) count() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) (nornir_imageregistration.core.Sequence method) Create() (nornir_buildmanager.pipelinemanager.VolumeManager class method) create_shared_memory_array() (in module nornir_imageregistration.core) CreateDistanceImage() (in module nornir_imageregistration.assemble_tiles) CreateExtremaMask() (in module nornir_imageregistration.core) CreateVolumeController() (in module nornir_volumecontroller) (in module nornir_volumecontroller.factory) CreationTime (nornir_buildmanager.pipelinemanager.XElementWrapper property) CropImage() (in module nornir_imageregistration.core) CropImageRect() (in module nornir_imageregistration.core) ctime() (nornir_buildmanager.pipelinemanager.datetime method)

D

Data (class in nornir_volumemodel) DataChecksum() (in module nornir_shared.checksum) date() (nornir_buildmanager.pipelinemanager.datetime method) datetime (class in nornir_buildmanager.pipelinemanager) deque (class in nornir_imageregistration.assemble_tiles) (class in nornir_imageregistration.core) Description (nornir_buildmanager.pipelinemanager.PipelineManager property) DimensionWithOverlap() (in module nornir_imageregistration.core) DirectoryResource (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) (class in nornir_volumemodel.model.block) (class in nornir_volumemodel.model.channel) (class in nornir_volumemodel.model.section) (class in nornir_volumemodel.model.volume)

done() (nornir_imageregistration.assemble_tiles.Future method) dst() (nornir_buildmanager.pipelinemanager.datetime method) (nornir_buildmanager.pipelinemanager.timezone method) dtype (nornir_imageregistration.core.memmap_metadata property)

E

elapsed_time (nornir_pools.Task property) (nornir_pools.task.Task property) elapsed_time_str (nornir_pools.Task property) (nornir_pools.task.Task property) ElapsedString() (nornir_buildmanager.build.TaskTimer method), [1] (nornir_buildmanager.pipelinemanager.TaskTimer method) ElapsedTimes (nornir_buildmanager.build.TaskTimer property), [1] (nornir_buildmanager.pipelinemanager.TaskTimer property) ElementHasChangesToSave (nornir_buildmanager.pipelinemanager.XElementWrapper property) EmailArgs (class in nornir_shared.emaillib) EmptyDistanceBuffer() (in module nornir_imageregistration.assemble_tiles) End() (nornir_buildmanager.build.TaskTimer method), [1] (nornir_buildmanager.pipelinemanager.TaskTimer method) end_profiling() (in module nornir_pools) enqueue_task() (nornir_pools.poolbase.LocalThreadPoolBase method)

EnsureMatchingImageMaskShape() (in module nornir_imageregistration.core) Enum (class in nornir_pools) Epilog (nornir_buildmanager.pipelinemanager.PipelineManager property) ErrorList() (nornir_buildmanager.pipelinemanager.PipelineError method) exception() (nornir_imageregistration.assemble_tiles.Future method) Execute() (in module nornir_buildmanager.build), [1] (nornir_buildmanager.pipelinemanager.PipelineManager method) ExecuteChain() (in module nornir_buildmanager.build), [1] ExecuteChildPipelines() (nornir_buildmanager.pipelinemanager.PipelineManager method) extend() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) extendleft() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) ExternalResource (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) ExtractROI() (in module nornir_imageregistration.core)

F

FastClosePools() (in module nornir_pools) FileChecksum() (in module nornir_shared.checksum) FileResource (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) (class in nornir_volumemodel.model.transform) files (nornir_shared.emaillib.EmailArgs attribute) FilesizeChecksum() (in module nornir_shared.checksum) FileSystemModifiedSinceLastValidation (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) Filter (class in nornir_volumemodel) Filters (nornir_volumemodel.Channel property) (nornir_volumemodel.model.channel.Channel property) find() (nornir_buildmanager.pipelinemanager.XElementWrapper method) findall() (nornir_buildmanager.pipelinemanager.XElementWrapper method) FindAllFromParent() (nornir_buildmanager.pipelinemanager.XElementWrapper method) FindFromParent() (nornir_buildmanager.pipelinemanager.XElementWrapper method) FindParent() (nornir_buildmanager.pipelinemanager.XElementWrapper method)

FixedBoundingBox (nornir_imageregistration.IDiscreteTransform property) FixedImageToWarpedSpace() (in module nornir_imageregistration.assemble) flip_ud (nornir_imageregistration.assemble.IRigidTransform property) flippedud (nornir_imageregistration.alignment_record.AlignmentRecord property) floating (class in nornir_imageregistration.assemble) fold (nornir_buildmanager.pipelinemanager.datetime attribute) ForceGrayscale() (in module nornir_imageregistration.core) fromAddress (nornir_shared.emaillib.EmailArgs attribute) fromFriendlyAddress (nornir_shared.emaillib.EmailArgs attribute) fromisoformat() (nornir_buildmanager.pipelinemanager.datetime class method) fromtimestamp() (nornir_buildmanager.pipelinemanager.datetime class method) fromutc() (nornir_buildmanager.pipelinemanager.timezone method) FullPath (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) (nornir_volumemodel.ExternalResource property) (nornir_volumemodel.model.base_classes.ExternalResource property) Future (class in nornir_imageregistration.assemble_tiles)

G

generate_id() (nornir_pools.Task class method) (nornir_pools.task.Task class method) GenErrorMessage() (nornir_buildmanager.pipelinemanager.PipelineListIntersectionFailed class method) GenRandomData() (in module nornir_imageregistration.core) get_or_create_shared_memory_manager() (in module nornir_pools) get_valid_coords() (in module nornir_imageregistration.assemble) GetAndCreateProfileDataFileName() (in module nornir_pools) GetAndCreateProfileDataPath() (in module nornir_pools) GetArgParser() (nornir_buildmanager.pipelinemanager.PipelineManager method) GetAxis() (nornir_volumemodel.model.scale.Scale method) (nornir_volumemodel.Scale method) GetChannels() (in module nornir_volumecontroller.base_objects) GetChildByAttrib() (nornir_buildmanager.pipelinemanager.XElementWrapper method) GetChildrenByAttrib() (nornir_buildmanager.pipelinemanager.XElementWrapper method) GetData() (nornir_volumecontroller.base_objects.Volume method) (nornir_volumecontroller.base_objects.VolumeInterface method) (nornir_volumecontroller.Volume method) GetGlobalClusterPool() (in module nornir_pools), [1] GetGlobalLocalMachinePool() (in module nornir_pools) GetGlobalMultithreadingPool() (in module nornir_pools), [1] GetGlobalProcessPool() (in module nornir_pools), [1] GetGlobalSerialPool() (in module nornir_pools)

GetGlobalThreadPool() (in module nornir_pools), [1] GetHighestResolution() (nornir_volumecontroller.base_objects.Volume method) (nornir_volumecontroller.Volume method) GetImages() (nornir_volumemodel.ImageSet method) GetImageSize() (in module nornir_imageregistration.core) GetImageTile() (in module nornir_imageregistration.core) GetLocalMachinePool() (in module nornir_pools) GetModelLoadFuncFromTag() (in module nornir_volumemodel.persistance.nornir_xml.main) GetMultithreadingPool() (in module nornir_pools), [1] GetOrCreate() (nornir_imageregistration.assemble_tiles.WindowFilterCache method) GetParallelPythonPool() (in module nornir_pools), [1] GetPointPairsInSourceRect() (nornir_imageregistration.IControlPoints method) GetPointPairsInTargetRect() (nornir_imageregistration.IControlPoints method) GetProcessAndThreadUniqueString() (in module nornir_imageregistration.assemble_tiles) GetProcessPool() (in module nornir_pools), [1] GetRigidState() (nornir_imageregistration.assemble.IRigidTransform method) GetROICoords() (in module nornir_imageregistration.assemble) GetSearchRoot() (nornir_buildmanager.pipelinemanager.PipelineManager class method) GetSerialPool() (in module nornir_pools) GetThreadPool() (in module nornir_pools), [1] GetTilesPath() (nornir_volumecontroller.base_objects.VolumeRegisteredChannel method) GetTransformedCornerPoints() (nornir_imageregistration.alignment_record.AlignmentRecord method)

H

has_default() (nornir_buildmanager.pipelinemanager.TypeVar method) (nornir_pools.ParamSpec method) HasCupy() (in module nornir_imageregistration) HasCuVS() (in module nornir_imageregistration)

Help (nornir_buildmanager.pipelinemanager.PipelineManager property) HistogramData (nornir_volumemodel.Filter property) host (nornir_shared.emaillib.EmailArgs attribute) hour (nornir_buildmanager.pipelinemanager.datetime attribute)

I

IControlPoints (class in nornir_imageregistration) IDiscreteTransform (class in nornir_imageregistration) IgnoreUnderflow (class in nornir_imageregistration.assemble) Image (class in nornir_volumemodel) (nornir_volumemodel.Level property) image_to_uint8() (in module nornir_imageregistration.core) ImageIntensityAtPercent() (in module nornir_imageregistration.core) ImageParamToImageArray() (in module nornir_imageregistration.core) ImageParamToNumpyImageArray() (in module nornir_imageregistration.core) ImageSet (class in nornir_volumemodel) (nornir_volumemodel.Filter property) ImageToTiles() (in module nornir_imageregistration.core) ImageToTilesGenerator() (in module nornir_imageregistration.core) IndentLevel (nornir_buildmanager.pipelinemanager.PipelineManager attribute) index() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) (nornir_imageregistration.core.Sequence method) index_with_array() (in module nornir_imageregistration.core) indexofchild() (nornir_buildmanager.pipelinemanager.XElementWrapper method) init_computational_library() (in module nornir_buildmanager.build), [1] init_pool_process() (in module nornir_pools) InitLogging() (in module nornir_buildmanager.build), [1] InputTransformChecksum (nornir_volumemodel.InputTransformPropertySet property) (nornir_volumemodel.model.transform.InputTransformPropertySet property) InputTransformPropertySet (class in nornir_volumemodel) (class in nornir_volumemodel.model.transform) InputTransformType (nornir_volumemodel.InputTransformPropertySet property) (nornir_volumemodel.model.transform.InputTransformPropertySet property)

insert() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) InstrumentedThreadPoolExecutor (class in nornir_pools) InvalidIndices() (in module nornir_imageregistration.assemble) InverseTransform() (nornir_imageregistration.assemble.ITransform method) (nornir_imageregistration.ITransform method) Invert() (nornir_imageregistration.alignment_record.AlignmentRecord method) invoke_with_profiler() (in module nornir_pools) IPool (class in nornir_pools) (class in nornir_pools.poolbase) IRigidTransform (class in nornir_imageregistration.assemble) is_headless() (in module nornir_buildmanager.build), [1] iscompleted() (nornir_pools.Task method) (nornir_pools.task.Task method) isgenerator() (in module nornir_buildmanager.pipelinemanager) isoformat() (nornir_buildmanager.pipelinemanager.datetime method) IsParallelPythonAvailable() (in module nornir_pools) IsParent() (nornir_buildmanager.pipelinemanager.XElementWrapper method) IsValid() (nornir_buildmanager.pipelinemanager.XContainerElementWrapper method) (nornir_buildmanager.pipelinemanager.XElementWrapper method) IsValidLazy() (nornir_buildmanager.pipelinemanager.XElementWrapper method) Iterable (class in nornir_imageregistration.core) ITransform (class in nornir_imageregistration) (class in nornir_imageregistration.assemble) ITransformChangeEvents (class in nornir_imageregistration) ITransformScaling (class in nornir_imageregistration) ITransformTranslation (class in nornir_imageregistration)

K

KeepGetOrCreate() (nornir_imageregistration.assemble_tiles.WindowFilterCache method) KeyWordArgs() (nornir_buildmanager.pipelinemanager.ArgumentSet method)

kwargs (nornir_pools.ParamSpec attribute) (nornir_pools.Task attribute) (nornir_pools.task.Task attribute)

L

LastFileSystemModificationTime (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) Level (class in nornir_volumemodel) ListPipelines() (nornir_buildmanager.pipelinemanager.PipelineManager class method) Load() (in module nornir_volumemodel.persistance.nornir_xml.main) (nornir_buildmanager.pipelinemanager.PipelineManager class method) (nornir_buildmanager.pipelinemanager.VolumeManager class method) (nornir_imageregistration.assemble.ITransform method) (nornir_imageregistration.ITransform method) Load_Xml() (in module nornir_volumemodel)

LoadAllLinkedNodes() (nornir_buildmanager.pipelinemanager.XElementWrapper method) LoadImage() (in module nornir_imageregistration.core) LoadModelObjectFromXmlPath() (in module nornir_volumemodel.persistance.nornir_xml.main) LoadPipelineXML() (nornir_buildmanager.pipelinemanager.PipelineManager class method) LoadXmlElementFromPath() (in module nornir_volumemodel.persistance.nornir_xml.main) LocalThreadPoolBase (class in nornir_pools.poolbase) logger (nornir_buildmanager.pipelinemanager.PipelineManager attribute) (nornir_buildmanager.pipelinemanager.XElementWrapper attribute) (nornir_pools.poolbase.PoolBase property) lowpriority() (in module nornir_buildmanager.build), [1]

M

MappedBoundingBox (nornir_imageregistration.IDiscreteTransform property) mark_task_finished() (nornir_pools.poolbase.LocalThreadPoolBase method) mark_task_started() (nornir_pools.poolbase.LocalThreadPoolBase method) MaskPath (nornir_volumemodel.Image property) max (nornir_buildmanager.pipelinemanager.datetime attribute) (nornir_buildmanager.pipelinemanager.timezone attribute) max_workers (nornir_pools.poolbase.LocalThreadPoolBase property) (nornir_pools.poolbase.PoolBase property) maxlen (nornir_imageregistration.assemble_tiles.deque attribute) (nornir_imageregistration.core.deque attribute) memmap_metadata (class in nornir_imageregistration.core) MergeProfilerStats() (in module nornir_pools) message (nornir_shared.emaillib.EmailArgs attribute) microsecond (nornir_buildmanager.pipelinemanager.datetime attribute) min (nornir_buildmanager.pipelinemanager.datetime attribute) (nornir_buildmanager.pipelinemanager.timezone attribute) MinAxisScales() (nornir_volumecontroller.base_objects.Scale class method) minute (nornir_buildmanager.pipelinemanager.datetime attribute) mode (nornir_imageregistration.core.memmap_metadata property) ModelBase (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) (class in nornir_volumemodel.model.scale) ModelFromXMLElement() (in module nornir_volumemodel.persistance.nornir_xml.main) module nornir_buildmanager nornir_buildmanager.build, [1] nornir_buildmanager.operations nornir_buildmanager.pipelinemanager nornir_imageregistration nornir_imageregistration.assemble nornir_imageregistration.assemble_tiles nornir_imageregistration.core nornir_pools nornir_pools.poolbase nornir_shared nornir_shared.checksum nornir_shared.emaillib nornir_volumecontroller nornir_volumecontroller.base_objects nornir_volumecontroller.factory nornir_volumecontroller.spatial nornir_volumemodel nornir_volumemodel.model.base_classes nornir_volumemodel.model.block nornir_volumemodel.model.channel nornir_volumemodel.model.scale nornir_volumemodel.model.section nornir_volumemodel.model.transform nornir_volumemodel.model.volume nornir_volumemodel.persistance.nornir_xml.main

my_cheesy_map_coordinates() (in module nornir_imageregistration.assemble)

N

name (nornir_imageregistration.core.SharedMemory property) (nornir_pools.IPool property) (nornir_pools.poolbase.IPool property) (nornir_pools.poolbase.PoolBase property) (nornir_pools.Task attribute) (nornir_pools.task.Task attribute) Name (nornir_volumecontroller.base_objects.Volume property) (nornir_volumecontroller.base_objects.VolumeRegisteredChannel property) (nornir_volumecontroller.Volume property) (nornir_volumemodel.model.base_classes.Named property) (nornir_volumemodel.model.block.Named property) (nornir_volumemodel.model.channel.Named property) (nornir_volumemodel.model.volume.Named property) (nornir_volumemodel.Named property) Named (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) (class in nornir_volumemodel.model.block) (class in nornir_volumemodel.model.channel) (class in nornir_volumemodel.model.volume) NearestFixedPoint() (nornir_imageregistration.IControlPoints method) NearestPowerOfTwoWithOverlap() (in module nornir_imageregistration.core) NearestWarpedPoint() (nornir_imageregistration.IControlPoints method) NeedsValidation (nornir_buildmanager.pipelinemanager.XElementWrapper property) (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) nested_wait_guard() (nornir_pools.poolbase.LocalThreadPoolBase method) NextSmoothFFTSize() (in module nornir_imageregistration.core) NormalizeImage() (in module nornir_imageregistration.core) nornir_buildmanager module nornir_buildmanager.build module, [1] nornir_buildmanager.operations module nornir_buildmanager.pipelinemanager module nornir_imageregistration module nornir_imageregistration.assemble module nornir_imageregistration.assemble_tiles module nornir_imageregistration.core module nornir_pools module nornir_pools.poolbase module

nornir_shared module nornir_shared.checksum module nornir_shared.emaillib module nornir_volumecontroller module nornir_volumecontroller.base_objects module nornir_volumecontroller.factory module nornir_volumecontroller.spatial module nornir_volumemodel module nornir_volumemodel.model.base_classes module nornir_volumemodel.model.block module nornir_volumemodel.model.channel module nornir_volumemodel.model.scale module nornir_volumemodel.model.section module nornir_volumemodel.model.transform module nornir_volumemodel.model.volume module nornir_volumemodel.persistance.nornir_xml.main module NornirMissingDependencyException NornirRethrownException now() (nornir_buildmanager.pipelinemanager.datetime class method) npArrayToSharedArray() (in module nornir_imageregistration.core) num_active_tasks (nornir_pools.IPool property) (nornir_pools.poolbase.IPool property) (nornir_pools.poolbase.LocalThreadPoolBase property) Number (nornir_volumemodel.Level property) (nornir_volumemodel.model.base_classes.Numbered property) (nornir_volumemodel.model.section.Numbered property) (nornir_volumemodel.Numbered property) Numbered (class in nornir_volumemodel) (class in nornir_volumemodel.model.base_classes) (class in nornir_volumemodel.model.section) NumControlPoints (nornir_imageregistration.IControlPoints property)

O

OneBit_img_from_bool_array() (in module nornir_imageregistration.core)

OnParentChanged() (nornir_buildmanager.pipelinemanager.XElementWrapper method)

P

Parameters (nornir_buildmanager.pipelinemanager.ArgumentSet property) ParameterToStosTransform() (in module nornir_imageregistration.assemble) ParamSpec (class in nornir_pools) Parent (nornir_buildmanager.pipelinemanager.XElementWrapper property) (nornir_volumemodel.ExternalResource property) (nornir_volumemodel.model.base_classes.ExternalResource property) password (nornir_shared.emaillib.EmailArgs attribute) Path (nornir_buildmanager.pipelinemanager.XContainerElementWrapper property) (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) path (nornir_imageregistration.core.memmap_metadata property) Path (nornir_volumemodel.ExternalResource property) (nornir_volumemodel.model.base_classes.ExternalResource property) PathLike (class in nornir_buildmanager.pipelinemanager) peak (nornir_imageregistration.alignment_record.AlignmentRecord property) peak_ratio (nornir_imageregistration.alignment_record.AlignmentRecord property) PipelineArgumentNotFound PipelineError PipelineListIntersectionFailed PipelineManager (class in nornir_buildmanager.pipelinemanager) PipelineRegExSearchFailed PipelineSearchFailed PipelineSearchRootNotFound PipelineSelectFailed PointPairsToTargetPoints() (nornir_imageregistration.IControlPoints method) PointPairsToWarpedPoints() (nornir_imageregistration.IControlPoints method)

points (nornir_imageregistration.IControlPoints property) pool (nornir_pools.Task property) (nornir_pools.task.Task property) PoolBase (class in nornir_pools.poolbase) PoolFactory (class in nornir_pools) PoolKind (class in nornir_pools) (class in nornir_pools.poolbase) pop() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) popleft() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) port (nornir_shared.emaillib.EmailArgs attribute) print_help() (in module nornir_buildmanager.build), [1] PrintActiveTaskCount() (nornir_pools.poolbase.PoolBase method) PrintPipelineEnumeration() (nornir_buildmanager.pipelinemanager.PipelineManager class method) PROCESS (nornir_pools.PoolKind attribute) ProcessIterateNode() (nornir_buildmanager.pipelinemanager.PipelineManager method) ProcessPythonCall() (nornir_buildmanager.pipelinemanager.PipelineManager method) ProcessRequireMatchNode() (nornir_buildmanager.pipelinemanager.PipelineManager static method) ProcessSelectNode() (nornir_buildmanager.pipelinemanager.PipelineManager method) ProcessStageElement() (nornir_buildmanager.pipelinemanager.PipelineManager method) promote_dtype_for_value_range() (in module nornir_imageregistration.core) Protocol (class in nornir_buildmanager.pipelinemanager) (class in nornir_pools) PruneData (nornir_volumemodel.Filter property) publish_run_event() (in module nornir_buildmanager.pipelinemanager)

Q

queued_tasks (nornir_pools.poolbase.LocalThreadPoolBase property) (nornir_pools.poolbase.PoolBase property)

R

RaiseOnDuplicateLink() (nornir_buildmanager.pipelinemanager.XContainerElementWrapper static method) random_generator() (in module nornir_imageregistration.core) RandomNoiseMask() (in module nornir_imageregistration.core) rangle (nornir_imageregistration.alignment_record.AlignmentRecord property) ravel_index() (in module nornir_imageregistration.core) read() (nornir_buildmanager.pipelinemanager.SupportsRead method) read_data() (in module nornir_buildmanager.pipelinemanager) regex (nornir_buildmanager.pipelinemanager.PipelineRegExSearchFailed attribute) RelativePath (nornir_volumemodel.ExternalResource property) (nornir_volumemodel.model.base_classes.ExternalResource property) ReleaseStagePools() (in module nornir_pools) remove() (nornir_buildmanager.pipelinemanager.XElementWrapper method) (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) remove_duplicate_points() (in module nornir_imageregistration.core) remove_finished_threads() (nornir_pools.poolbase.LocalThreadPoolBase method) RemoveAttributes() (nornir_buildmanager.pipelinemanager.ArgumentSet method) RemoveDuplicateElements() (nornir_buildmanager.pipelinemanager.XElementWrapper class method) RemoveOldChildrenByAttrib() (nornir_buildmanager.pipelinemanager.XElementWrapper method) RemoveOnChangeEventListener() (nornir_imageregistration.ITransformChangeEvents method) RemoveParameters() (nornir_buildmanager.pipelinemanager.ArgumentSet method)

RemovePipelineNodeVariable() (nornir_buildmanager.pipelinemanager.PipelineManager static method) RemoveVariable() (nornir_buildmanager.pipelinemanager.ArgumentSet method) RepairMissingLinkElements() (nornir_buildmanager.pipelinemanager.XContainerElementWrapper method) replace() (nornir_buildmanager.pipelinemanager.datetime method) ReplaceChildWithLink() (nornir_buildmanager.pipelinemanager.XElementWrapper method) ReplaceImageExtremaWithNoise() (in module nornir_imageregistration.core) ReplaceVariable() (nornir_buildmanager.pipelinemanager.ArgumentSet method) RequireSetMembership() (nornir_buildmanager.pipelinemanager.PipelineManager static method) ResetElementChangeFlags() (nornir_buildmanager.pipelinemanager.XElementWrapper method) ResizeImage() (in module nornir_imageregistration.core) resolution (nornir_buildmanager.pipelinemanager.datetime attribute) resolve_iterate_candidates() (in module nornir_buildmanager.pipelinemanager) result() (nornir_imageregistration.assemble_tiles.Future method) reverse() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) RgbLikeToGrayscaleLuminance() (in module nornir_imageregistration.core) Root (nornir_buildmanager.pipelinemanager.XElementWrapper property) rotate() (nornir_imageregistration.assemble_tiles.deque method) (nornir_imageregistration.core.deque method) running() (nornir_imageregistration.assemble_tiles.Future method) RunPipeline() (nornir_buildmanager.pipelinemanager.PipelineManager class method)

S

SafeROIRange() (in module nornir_imageregistration.core) Save() (in module nornir_volumemodel.persistance.nornir_xml.main) (nornir_buildmanager.pipelinemanager.VolumeManager class method) (nornir_buildmanager.pipelinemanager.XContainerElementWrapper method) Save_Xml() (in module nornir_volumemodel) SaveAsLinkedElement (nornir_buildmanager.pipelinemanager.XContainerElementWrapper property) SaveImage() (in module nornir_imageregistration.core) SaveImage_JPeg2000() (in module nornir_imageregistration.core) SaveSingleFile() (nornir_buildmanager.pipelinemanager.VolumeManager class method) scalar (nornir_imageregistration.assemble.IRigidTransform property) ScalarForMaxDimension() (in module nornir_imageregistration.core) Scale (class in nornir_volumecontroller.base_objects) (class in nornir_volumemodel) (class in nornir_volumemodel.model.scale) scale (nornir_imageregistration.alignment_record.AlignmentRecord property) Scale (nornir_volumecontroller.base_objects.VolumeRegisteredChannel property) (nornir_volumemodel.Channel property) (nornir_volumemodel.model.channel.Channel property) Scale() (nornir_imageregistration.ITransformScaling method) ScaleImage() (in module nornir_imageregistration.core) second (nornir_buildmanager.pipelinemanager.datetime attribute) Section (class in nornir_volumemodel) (class in nornir_volumemodel.model.section) Sections (nornir_volumemodel.Block property) (nornir_volumemodel.model.block.Block property) SectionsInBoundingBox() (in module nornir_volumecontroller.spatial) seed_random_data() (in module nornir_imageregistration.core) SendMail() (in module nornir_shared.emaillib) Sequence (class in nornir_imageregistration.core) set_completion_time() (nornir_pools.Task method) (nornir_pools.task.Task method) set_exception() (nornir_imageregistration.assemble_tiles.Future method) set_result() (nornir_imageregistration.assemble_tiles.Future method) set_running_or_notify_cancel() (nornir_imageregistration.assemble_tiles.Future method)

SetAxis() (nornir_volumemodel.model.scale.Scale method) (nornir_volumemodel.Scale method) SetParentNoChangeFlag() (nornir_buildmanager.pipelinemanager.XElementWrapper method) SetRigidState() (nornir_imageregistration.assemble.IRigidTransform method) SetupLogging() (in module nornir_buildmanager.build), [1] shape (nornir_imageregistration.core.memmap_metadata property) SharedMemory (class in nornir_imageregistration.core) Shrink() (in module nornir_imageregistration.core) shutdown() (nornir_imageregistration.assemble_tiles.ThreadPoolExecutor method) (nornir_pools.IPool method) (nornir_pools.poolbase.IPool method) (nornir_pools.poolbase.LocalThreadPoolBase method) size (nornir_imageregistration.core.SharedMemory property) SmoothFFTSizeWithOverlap() (in module nornir_imageregistration.core) sort() (nornir_buildmanager.pipelinemanager.XElementWrapper method) sort_iterate_candidates() (in module nornir_buildmanager.pipelinemanager) SortKey (nornir_buildmanager.pipelinemanager.XContainerElementWrapper property) (nornir_buildmanager.pipelinemanager.XElementWrapper property) source_space_center_of_rotation (nornir_imageregistration.assemble.IRigidTransform property) SourceBoundingBox (nornir_imageregistration.IControlPoints property) SourceImageToTargetSpace() (in module nornir_imageregistration.assemble) SourcePoints (nornir_imageregistration.IControlPoints property) Start() (nornir_buildmanager.build.TaskTimer method), [1] (nornir_buildmanager.pipelinemanager.TaskTimer method) start_profiling() (in module nornir_pools) StosGroups() (nornir_volumemodel.Block method) (nornir_volumemodel.model.block.Block method) StosMaps() (nornir_volumemodel.Block method) (nornir_volumemodel.model.block.Block method) strptime() (nornir_buildmanager.pipelinemanager.datetime class method) subject (nornir_shared.emaillib.EmailArgs attribute) submit() (nornir_imageregistration.assemble_tiles.ThreadPoolExecutor method) (nornir_pools.InstrumentedThreadPoolExecutor method) SubstituteStringVariables() (nornir_buildmanager.pipelinemanager.ArgumentSet method) SupportsRead (class in nornir_buildmanager.pipelinemanager)

T

target_offset (nornir_imageregistration.assemble.IRigidTransform property) TargetBoundingBox (nornir_imageregistration.IControlPoints property) (nornir_imageregistration.IDiscreteTransform property) TargetImageToSourceSpace() (in module nornir_imageregistration.assemble) TargetPoints (nornir_imageregistration.IControlPoints property) Task (class in nornir_pools) (class in nornir_pools.task) task_end_time (nornir_pools.Task attribute) (nornir_pools.task.Task attribute) task_id (nornir_pools.Task property) (nornir_pools.task.Task property) task_start_time (nornir_pools.Task attribute) (nornir_pools.task.Task attribute) TaskTimer (class in nornir_buildmanager.build), [1] (class in nornir_buildmanager.pipelinemanager) THREAD (nornir_pools.PoolKind attribute) ThreadPoolExecutor (class in nornir_imageregistration.assemble_tiles) TileGridShape() (in module nornir_imageregistration.core) TilePyramid (class in nornir_volumemodel) (nornir_volumemodel.Filter property) TilesToImage() (in module nornir_imageregistration.assemble_tiles) TilesToImageParallel() (in module nornir_imageregistration.assemble_tiles) TilesToImageThreaded() (in module nornir_imageregistration.assemble_tiles) time() (nornir_buildmanager.pipelinemanager.datetime method) timestamp() (nornir_buildmanager.pipelinemanager.datetime method) timetuple() (nornir_buildmanager.pipelinemanager.datetime method) timetz() (nornir_buildmanager.pipelinemanager.datetime method) timezone (class in nornir_buildmanager.pipelinemanager) toAddresses (nornir_shared.emaillib.EmailArgs attribute) ToElementString() (nornir_buildmanager.pipelinemanager.PipelineManager class method) (nornir_buildmanager.pipelinemanager.XElementWrapper method) (nornir_buildmanager.pipelinemanager.XResourceElementWrapper method) ToImageTransform() (nornir_imageregistration.alignment_record.AlignmentRecord method)

ToITKString() (nornir_imageregistration.assemble.ITransform method) (nornir_imageregistration.ITransform method) ToSpatialTransform() (nornir_imageregistration.alignment_record.AlignmentRecord method) ToStos() (nornir_imageregistration.alignment_record.AlignmentRecord method) Transform (class in nornir_volumemodel) (class in nornir_volumemodel.model.transform) (nornir_volumecontroller.base_objects.VolumeRegisteredChannel property) Transform() (nornir_imageregistration.assemble.ITransform method) (nornir_imageregistration.ITransform method) transform_for_host_assembly() (in module nornir_imageregistration.assemble) transform_path_map (nornir_volumecontroller.base_objects.Volume property) (nornir_volumecontroller.Volume property) TransformImage() (in module nornir_imageregistration.assemble) Transforms (nornir_volumemodel.Channel property) (nornir_volumemodel.model.channel.Channel property) TransformStos() (in module nornir_imageregistration.assemble) TransformTile() (in module nornir_imageregistration.assemble_tiles) translate() (nornir_imageregistration.alignment_record.AlignmentRecord method) TranslateFixed() (nornir_imageregistration.ITransformTranslation method) TranslateWarped() (nornir_imageregistration.ITransformTranslation method) TryGetSubstituteObject() (nornir_buildmanager.pipelinemanager.ArgumentSet method) TryGetValueForKey() (nornir_buildmanager.pipelinemanager.ArgumentSet method) TryRegisterAtExit() (nornir_pools.poolbase.LocalThreadPoolBase class method) TryReportActiveTaskCount() (nornir_pools.poolbase.PoolBase method) TryReportPoolLoad() (nornir_pools.poolbase.PoolBase method) type (nornir_imageregistration.assemble.ITransform property) (nornir_imageregistration.ITransform property) Type (nornir_volumemodel.FileResource property) (nornir_volumemodel.model.base_classes.FileResource property) (nornir_volumemodel.model.transform.FileResource property) TypeVar (class in nornir_buildmanager.pipelinemanager) tzinfo (nornir_buildmanager.pipelinemanager.datetime attribute) tzname() (nornir_buildmanager.pipelinemanager.datetime method) (nornir_buildmanager.pipelinemanager.timezone method)

U

uint16_img_from_float_array() (in module nornir_imageregistration.core) uint16_img_from_uint16_array() (in module nornir_imageregistration.core) UnitsOfMeasure (nornir_volumemodel.model.scale.AxisScale property) UnitsPerPixel (nornir_volumemodel.model.scale.AxisScale property) unlink() (nornir_imageregistration.core.SharedMemory method) unlink_shared_memory() (in module nornir_imageregistration.core) UpdateOrAddChild() (nornir_buildmanager.pipelinemanager.XElementWrapper method) UpdateOrAddChildByAttrib() (nornir_buildmanager.pipelinemanager.XElementWrapper method)

UpdateValidationTime() (nornir_buildmanager.pipelinemanager.XResourceElementWrapper method) username (nornir_shared.emaillib.EmailArgs attribute) utc (nornir_buildmanager.pipelinemanager.timezone attribute) utcfromtimestamp() (nornir_buildmanager.pipelinemanager.datetime class method) utcnow() (nornir_buildmanager.pipelinemanager.datetime class method) utcoffset() (nornir_buildmanager.pipelinemanager.datetime method) (nornir_buildmanager.pipelinemanager.timezone method) utctimetuple() (nornir_buildmanager.pipelinemanager.datetime method)

V

ValidationTime (nornir_buildmanager.pipelinemanager.XResourceElementWrapper property) Variables (nornir_buildmanager.pipelinemanager.ArgumentSet property) Version (nornir_buildmanager.pipelinemanager.XElementWrapper property) (nornir_volumemodel.model.base_classes.ModelBase property) (nornir_volumemodel.model.scale.ModelBase property) (nornir_volumemodel.ModelBase property)

Volume (class in nornir_volumecontroller) (class in nornir_volumecontroller.base_objects) (class in nornir_volumemodel) (class in nornir_volumemodel.model.volume) VolumeInterface (class in nornir_volumecontroller.base_objects) VolumeManager (class in nornir_buildmanager.pipelinemanager) VolumeRegisteredChannel (class in nornir_volumecontroller.base_objects)

W

wait() (nornir_pools.Task method) (nornir_pools.task.Task method) wait_completion() (nornir_pools.IPool method) (nornir_pools.poolbase.IPool method) (nornir_pools.poolbase.LocalThreadPoolBase method) wait_return() (nornir_pools.Task method) (nornir_pools.task.Task method) WaitOnAllPools() (in module nornir_pools) WaitOnProcessPools() (in module nornir_pools)

WaitOnThreadPools() (in module nornir_pools) WarpedImageToFixedSpace() (in module nornir_imageregistration.assemble) weight (nornir_imageregistration.alignment_record.AlignmentRecord property) WeightKey() (nornir_imageregistration.alignment_record.AlignmentRecord method) WindowFilterCache (class in nornir_imageregistration.assemble_tiles) WorkerCheckInterval (nornir_pools.poolbase.LocalThreadPoolBase attribute) wrap() (nornir_buildmanager.pipelinemanager.XElementWrapper class method) write_to_source_roi_coords() (in module nornir_imageregistration.assemble) write_to_target_roi_coords() (in module nornir_imageregistration.assemble) WriteStosPreviewImages() (in module nornir_imageregistration.assemble)

X

X (nornir_volumecontroller.base_objects.Scale property) (nornir_volumemodel.model.scale.Scale property) (nornir_volumemodel.Scale property) XContainerElementWrapper (class in nornir_buildmanager.pipelinemanager)

XElementWrapper (class in nornir_buildmanager.pipelinemanager) xpath (nornir_buildmanager.pipelinemanager.PipelineSearchFailed attribute) (nornir_buildmanager.pipelinemanager.PipelineSelectFailed attribute) XResourceElementWrapper (class in nornir_buildmanager.pipelinemanager)

Y

Y (nornir_volumecontroller.base_objects.Scale property) (nornir_volumemodel.model.scale.Scale property) (nornir_volumemodel.Scale property)

Z

Z (nornir_volumecontroller.base_objects.Scale property) (nornir_volumemodel.model.scale.Scale property) (nornir_volumemodel.Scale property)