Nornir documentation

Nornir takes large sets of overlapping images in 2D and produces registered (aligned) 2D and 3D volumes at scale.

Start

• Start here
  • New users
  • Agents and contributors
  • Performance
  • Reference
• Host requirements
  • Pyre on Windows
  • Headless pipeline on a workstation
  • Docker hosts
• Overview
  • Mission
  • History
  • Related tools
  • System notes
  • Terminology

Deployment & Configuration

• Deployment and configuration
  • Host layout
  • Stacks and commands
  • Configuration reference
  • Accounts and tokens
  • Ports and remote access
  • Debugging
  • Build appliance (nornir-build)
  • Programmer shell and Cursor worker
  • Build dashboard (nornir-dashboard)
  • Troubleshooting
  • Migrating from the old layout
  • What runs where
  • Zero to running

Concepts

• Concepts
  • Glossary
• Overview of volume building
  • Mosaic registration
  • Slice-to-slice registration
  • View and analyze

Guides

• Guides
  • Using Pyre
  • TEM build scripts
  • Build a volume

Agents and contributors

• Agents and contributors
  • Layout
  • Install
  • Logging and tests
  • Where the code lives

Performance

• Performance
  • Production envelope
  • Pools
  • CPU and GPU
  • Profiling

Reference

• Packages
  • nornir-shared
  • nornir-pools
  • nornir-imageregistration
  • nornir-buildmanager
  • nornir-volumecontroller
  • nornir-volumemodel
  • nornir-web
  • Installing Pyre on Windows
  • Pyre user changelog
  • Other repositories in the umbrella
• Pipeline catalogue
  • Import
  • Mosaic
  • Section alignment
  • Volume and export
• API reference
  • nornir_shared
  • nornir_pools
  • nornir_imageregistration
  • nornir_buildmanager
  • nornir_volumecontroller API
  • nornir_volumemodel API
• Docker images
  • Image catalogue
  • Annotation overlay gallery
• Development
  • Release process
  • Publishing the documentation
  • GitHub Pages hosting
  • Logging convention
  • Pyre development
  • Developer notes
  • Markdown in the monodoc
  • ir-refine-grid C++ → Python Parity Checklist
  • Grid690 Python Refine-Grid Parity — Change Log
  • ir-blob C++ → Python parity checklist

Indices

• Index

• Module Index

• Search Page